mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: variantbam
|
|
description: Filtering, downsampling and profiling alignments in BAM/CRAM formats
|
|
keywords:
|
|
- filter
|
|
- bam
|
|
- subsample
|
|
- downsample
|
|
- downsample bam
|
|
- subsample bam
|
|
tools:
|
|
- variantbam:
|
|
description: Filtering and profiling of next-generational sequencing data using region-specific rules
|
|
homepage: https://github.com/walaj/VariantBam
|
|
documentation: https://github.com/walaj/VariantBam#table-of-contents
|
|
tool_dev_url: https://github.com/walaj/VariantBam
|
|
doi: 10.1093/bioinformatics/btw111
|
|
licence: ['Apache-2.0']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bam:
|
|
type: file
|
|
description: Filtered or downsampled BAM file
|
|
pattern: "*.{bam}"
|
|
|
|
authors:
|
|
- "@bjohnnyd"
|