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32 lines
No EOL
587 B
Text
32 lines
No EOL
587 B
Text
nextflow.preview.dsl=2
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process MULTIQC {
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// tag "FastQC - $sample_id"
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input:
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path (file)
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val (outdir)
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val (multiqc_args)
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// multiqc_args are best passed into the workflow in the following manner:
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// --multiqc_args="--exlude STAR --title custom_report_title"
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val (verbose)
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output:
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path "*html", emit: html
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publishDir "${outdir}/multiqc",
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mode: "copy", overwrite: true
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script:
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if (verbose){
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println ("[MODULE] MULTIQC ARGS: " + multiqc_args)
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}
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"""
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module load multiqc
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multiqc $multiqc_args -x work .
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"""
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} |