Edmund Miller 2af071ed0d Fix subworkflows seperate from modules (#933) ... * ci: Remove pytest_subworkflows * ci(bam_sort_samtools): Depend on paths-filter instead of pytest-workflow Co-authored-by: Harshil Patel <drpatelhh@gmail.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * ci: Revert back to one job branch * ci(align_bowtie2): Run tests that depend on bam_sort_samtools * ci: Fix anchor not being created yet * ci: Update sra_fastq tags and pytest_modules * fix(bam_sort_samtools): Update nextflow.config with params * test(subworkflows): Update gatk_create_som_pon tags * ci: Point to subworkflow_hacks branch of nf-core tools Co-authored-by: Harshil Patel <drpatelhh@gmail.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>		2021-11-15 18:18:46 +00:00
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align_bowtie2	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00
bam_sort_samtools	Fix subworkflows seperate from modules (#933)	2021-11-15 18:18:46 +00:00
bam_stats_samtools	Update to allow cram + update needed to use the gatk4 modules in sarek (#976)	2021-10-29 13:01:05 +02:00
gatk_create_som_pon	feat: fastaidx -> fai (#1073)	2021-11-15 18:03:02 +01:00
sra_fastq	feat: add sub-workflow for SRA (#836)	2021-10-14 11:50:31 +02:00