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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
481 B
Text
16 lines
481 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { NANOLYSE } from '../../../modules/nanolyse/main.nf' addParams( options: [suffix: '.clean'] )
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workflow test_nanolyse {
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input = [
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[ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)]
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]
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fasta = file("https://github.com/wdecoster/nanolyse/raw/master/reference/lambda.fasta.gz", checkIfExists: true)
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NANOLYSE ( input, fasta )
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}
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