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52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: "pasty"
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description: Serogroup Pseudomonas aeruginosa assemblies
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keywords:
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- bacteria
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- serogroup
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- fasta
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- assembly
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tools:
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- "pasty":
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description: "A tool for in silico serogrouping of Pseudomonas aeruginosa isolates"
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homepage: "https://github.com/rpetit3/pasty"
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documentation: "https://github.com/rpetit3/pasty"
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tool_dev_url: "https://github.com/rpetit3/pasty"
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doi: ""
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licence: "['Apache-2.0']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: An assembly in FASTA format
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pattern: "*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tsv:
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type: file
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description: A tab-delimited file with the predicted serogroup
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pattern: "*.tsv"
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- blast:
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type: file
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description: A tab-delimited file of all blast hits
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pattern: "*.blastn.tsv"
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- details:
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type: file
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description: A tab-delimited file with details for each serogroup
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pattern: "*.details.tsv"
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authors:
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- "@rpetit3"
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