nf-core_modules/tests/software/multiqc/main.nf
Harshil Patel acb1a12a56
Re-organise all test data (#354)
* Re-organise all test data

* Fix ECLint

* Fix ECLint agaaainn

* Now is not the time EClint
2021-03-24 09:53:41 +00:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { FASTQC } from '../../../software/fastqc/main.nf' addParams( options: [:] )
include { MULTIQC } from '../../../software/multiqc/main.nf' addParams( options: [:] )
workflow test_multiqc {
input = [ [ id: 'test', single_end: false ],
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true),
file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_2.fastq.gz", checkIfExists: true) ]
]
FASTQC ( input )
MULTIQC ( FASTQC.out.zip.collect { it[1] } )
}