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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
937 B
YAML
33 lines
937 B
YAML
name: bbmap_index
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description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
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keywords:
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- mapping
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- index
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- fasta
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tools:
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- bbmap:
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description: BBMap is a short read aligner, as well as various other bioinformatic tools.
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homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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tool_dev_url: None
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doi: ""
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licence: ["UC-LBL license (see package)"]
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input:
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- fasta:
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type: fasta
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description: fasta formatted file with nucleotide sequences
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pattern: "*.{fna,fa,fasta}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- db:
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type: directory
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description: Directory with index files
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pattern: "ref"
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authors:
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- "@daniellundin"
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