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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
805 B
YAML
33 lines
805 B
YAML
name: bwameth_index
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description: Performs indexing of c2t converted reference genome
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keywords:
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- bwameth
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- 3-letter genome
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- index
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- methylseq
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- bisulphite
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- fasta
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tools:
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- bwameth:
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description: |
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Fast and accurate alignment of BS-Seq reads
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using bwa-mem and a 3-letter genome.
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homepage: https://github.com/brentp/bwa-meth
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documentation: https://github.com/brentp/bwa-meth
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arxiv: arXiv:1401.1129
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licence: ["MIT"]
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: dir
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description: Directory containing bwameth genome index
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pattern: "index"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@phue"
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