mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
f9d25aad7f
* fix: remove left-over unnecessary code * Update main.nf * Update hmmer/hmmalign command to natively accept gzipped input * Making @drpatelh happy Co-authored-by: Moritz E. Beber <midnighter@posteo.net> Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
17 lines
603 B
Text
17 lines
603 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { HMMER_HMMALIGN } from '../../../../modules/hmmer/hmmalign/main.nf'
|
|
|
|
workflow test_hmmer_hmmalign {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/e_coli_k12_16s.fna.gz') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
|
|
]
|
|
|
|
hmm = file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/bac.16S_rRNA.hmm.gz')
|
|
|
|
HMMER_HMMALIGN ( input, hmm )
|
|
}
|