nf-core_modules/tests/software
Harshil Patel 242fdb2f73
Version bumps and minor module updates (#406)
* Version bumps and minor module updates

* Fix Pangolin tests

* Fix SPAdes tests

* stageAs @phue
2021-04-06 13:38:41 +01:00
..
adapterremoval Update restructured paths (#380) 2021-03-24 18:26:54 +00:00
allelecounter Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
bandage/image Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bcftools update test data paths (#373) 2021-03-24 18:14:11 +00:00
bedtools Update bedtools modules with config logic (#369) 2021-03-24 14:14:19 +00:00
bismark Fixing vcftools and bismark tests (#383) 2021-03-25 09:12:08 +00:00
blast update tests for new config (#384) 2021-04-01 20:22:06 +01:00
bowtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bowtie2 Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
bwa Update test paths in bwa mappers (#387) 2021-03-25 09:24:21 +00:00
bwamem2 Update test paths in bwa mappers (#387) 2021-03-25 09:24:21 +00:00
bwameth Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
cat/fastq Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
cnvkit Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
cutadapt Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
dsh Update restructured paths (#380) 2021-03-24 18:26:54 +00:00
fastp modify fastp tests (#367) 2021-03-24 17:08:59 +01:00
fastqc Use a config containing all test data for module tests (#365) 2021-03-24 13:07:37 +00:00
fgbio New modules: Fgbio callmolecularconsensusreads and sortbam (#352) 2021-03-28 20:38:50 +01:00
flash update tests for new config (#384) 2021-04-01 20:22:06 +01:00
gatk4 gatk4 markduplicates (#356) 2021-03-26 23:25:40 +00:00
gffread Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
gunzip Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
hisat2 Add tests for hisat2 (#366) 2021-03-25 21:08:46 +00:00
homer/annotatepeaks Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
ivar Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
kallisto/index Add module kallisto/index (#357) 2021-03-24 12:25:39 +00:00
kraken2/run Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
methyldackel MethylDackel: fix version scraping (#401) 2021-04-06 10:59:33 +01:00
minia Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
minimap2/align Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
mosdepth update tests for new config (#384) 2021-04-01 20:22:06 +01:00
msisensor Add module: nf-core hackathon #207 : new module: msisensor/msi (#343) 2021-03-25 16:46:00 -04:00
multiqc Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
optitype update tests for new config (#384) 2021-04-01 20:22:06 +01:00
pangolin Version bumps and minor module updates (#406) 2021-04-06 13:38:41 +01:00
picard Fix a bunch of failing tests after switching to test config (#378) 2021-03-24 18:28:54 +00:00
preseq/lcextrap Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
prodigal Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
prokka Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
qualimap/bamqc update tests for new config (#384) 2021-04-01 20:22:06 +01:00
quast update tests for new config (#384) 2021-04-01 20:22:06 +01:00
salmon Fix the test path salmon/index and quant after switching to config data (#385) 2021-03-25 17:03:25 +00:00
samtools Update samtools modules with config logic (#381) 2021-03-24 18:15:30 +00:00
seacr/callpeak Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
seqkit/split2 Seqkit/split2 test path update (#372) 2021-03-24 17:05:43 +01:00
sequenzautils PR for sequenzautils/bam2seqz (#395) 2021-04-01 07:08:27 +02:00
seqwish/induce Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
shovill Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
spades Version bumps and minor module updates (#406) 2021-04-06 13:38:41 +01:00
star Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
strelka/germline Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
stringtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
subread/featurecounts Add tests for subread #106 (#393) 2021-04-01 20:02:36 +01:00
tabix update tests for new config (#384) 2021-04-01 20:22:06 +01:00
tiddit/sv update tests for new config (#384) 2021-04-01 20:22:06 +01:00
trimgalore Fix a bunch of failing tests after switching to test config (#378) 2021-03-24 18:28:54 +00:00
ucsc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
unicycler update tests for new config (#384) 2021-04-01 20:22:06 +01:00
untar Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
vcftools Fixing vcftools and bismark tests (#383) 2021-03-25 09:12:08 +00:00
yara Add YARA module (#353) 2021-03-24 17:14:52 +01:00