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1de4bd46b7
* Add merqury files * Remove md5sum for completeness stats file * update container and test output * Update modules/merqury/meta.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Explicitly set thread usage for meryl * Remove empty file md5sum Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>
26 lines
913 B
Text
26 lines
913 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MERYL_COUNT } from '../../../modules/meryl/count/main.nf'
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include { MERYL_UNIONSUM } from '../../../modules/meryl/unionsum/main.nf'
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include { MERQURY } from '../../../modules/merqury/main.nf'
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workflow test_merqury {
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input = [
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[ id:'test', single_end:false ], // meta map
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[
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file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_2_fastq_gz'], checkIfExists: true)
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]
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]
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assembly = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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]
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MERYL_COUNT ( input )
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MERYL_UNIONSUM ( MERYL_COUNT.out.meryl_db )
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MERQURY ( MERYL_UNIONSUM.out.meryl_db.join( Channel.value( assembly ) ) )
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}
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