mirror of
https://github.com/MillironX/nf-core_modules.git
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c2aa95cb6c
* add prokka module * adjust test outputs * fix prokka command * adjust test outputs * handle optional input * update pytest * update pytest * adjust test outputs * adjust test outputs * switch to lists for optional inputs, add md5sums for non-timestamped outputs * add optional prodigal training file * add optional prodigal training info to meta yaml
12 lines
380 B
Text
12 lines
380 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PROKKA } from '../../../software/prokka/main.nf' addParams( options: [:] )
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workflow test_prokka {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/genomics/sarscov2/fasta/test_genome.fasta", checkIfExists: true), ]
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PROKKA ( input, [], [] )
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}
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