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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.2 KiB
YAML
34 lines
1.2 KiB
YAML
- name: checkm lineagewf
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command: nextflow run ./tests/modules/checkm/lineagewf -entry test_checkm_lineagewf -c ./tests/config/nextflow.config -c ./tests/modules/checkm/lineagewf/nextflow.config
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tags:
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- checkm
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- checkm/lineagewf
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files:
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- path: output/checkm/test.tsv
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md5sum: d5559764f563c4b55223e4e4a3dc1ec9
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- path: output/checkm/test/checkm.log
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contains:
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- "INFO: Parsing HMM hits to marker genes:"
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- path: output/checkm/test/lineage.ms
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contains:
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- "# [Lineage Marker File]"
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- "contigs"
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- "UID1"
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- name: checkm lineagewf_multi
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command: nextflow run ./tests/modules/checkm/lineagewf -entry test_checkm_lineagewf_multi -c ./tests/config/nextflow.config -c ./tests/modules/checkm/lineagewf/nextflow.config
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tags:
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- checkm
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- checkm/lineagewf
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files:
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- path: output/checkm/test.tsv
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md5sum: 7e0fa177dcf151b84b7751813fbde3d1
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- path: output/checkm/test/checkm.log
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contains:
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- "INFO: Parsing HMM hits to marker genes:"
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- path: output/checkm/test/lineage.ms
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contains:
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- "# [Lineage Marker File]"
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- "contigs"
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- "UID1"
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- "genome"
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