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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
38 lines
1 KiB
YAML
38 lines
1 KiB
YAML
name: rsem_preparereference
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description: Prepare a reference genome for RSEM
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keywords:
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- rsem
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- reference
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tools:
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- rseqc:
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description: |
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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homepage: https://github.com/deweylab/RSEM
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documentation: https://github.com/deweylab/RSEM
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doi: https://doi.org/10.1186/1471-2105-12-323
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licence: ['GPL-3.0-or-later']
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input:
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- fasta:
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type: file
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description: The Fasta file of the reference genome
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pattern: "*.{fasta,fa}"
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- gtf:
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type: file
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description: The GTF file of the reference genome
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pattern: "*.gtf"
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output:
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- rsem:
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type: directory
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description: RSEM index directory
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pattern: "rsem"
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- transcript_fasta:
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type: file
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description: Fasta file of transcripts
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pattern: "rsem/*transcripts.fa"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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