James A. Fellows Yates e971f538a9 Module new version reporting fixes (#753) ... * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Fix IQ tree * Fix picard markdup and merge sam * Fix plink/vcf version * Fix plink version output * Fix prokka version command * Fix pydamage * Try fixing markduplicates * Fix snpEff * Fix vcftools version * Fix pydamage and filtersamreads test run * Fix MarkDuplicates tests * Add missing unsorted checks * Remove MD5 sym due to stochasicity in BAM file		2021-09-28 10:51:19 +01:00
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collectmultiplemetrics	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
collectwgsmetrics	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
filtersamreads	Module new version reporting fixes (#753)	2021-09-28 10:51:19 +01:00
markduplicates	Module new version reporting fixes (#753)	2021-09-28 10:51:19 +01:00
mergesamfiles	Module new version reporting fixes (#753)	2021-09-28 10:51:19 +01:00
sortsam	fix: picard sortsam (#605)	2021-07-21 14:34:21 +01:00