nf-core_modules/tests/modules/antismash/antismashlite/test.yml
2022-04-26 16:28:39 +02:00

105 lines
4.6 KiB
YAML

- name: antismash antismashlite test_antismashlite
command: nextflow run tests/modules/antismash/antismashlite -entry test_antismashlite -c tests/config/nextflow.config
tags:
- antismash/antismashlite
- antismash
files:
- path: output/antismash/test/NZ_CP069563.1.region001.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/NZ_CP069563.1.region002.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/css/bacteria.css
md5sum: 8b3c2f8b143d5245a5f42f55803c532c
- path: output/antismash/test/genome.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/genome.json
contains: ['{"version": "6.0.1", "input_file": "genome.gbff.gz", "records": [{"id": "NZ_CP069563.1", "seq": {"data":']
- path: output/antismash/test/genome.zip
- path: output/antismash/test/index.html
md5sum: 32aaf51315258af3b300d9a5bafd7bdc
- path: output/antismash/test/js/antismash.js
md5sum: 58e90c3d783ae014cc3d51849bcb50a2
- path: output/antismash/test/js/jquery.js
md5sum: 397754ba49e9e0cf4e7c190da78dda05
- path: output/antismash/test/js/jquery.tablesorter.min.js
md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
- path: output/antismash/test/regions.js
md5sum: dfc82025379d87df63fbfce734e67725
- path: output/antismash/test/test.log
contains: ['antiSMASH version: 6.0.1']
- path: output/antismash/versions.yml
md5sum: 7151dfd4d39173338397b2dab50acf8e
- path: output/untar1/versions.yml
md5sum: 1e4721017721c45370996318e6b807e5
- path: output/untar2/versions.yml
md5sum: a6ae4977a432f3c5ef26687cec8622de
- path: output/untar3/versions.yml
md5sum: a5ee00c1c426ed601ff654891ba0f645
- name: antismash antismashlite test_prokka_antismashlite
command: nextflow run tests/modules/antismash/antismashlite -entry test_prokka_antismashlite -c tests/config/nextflow.config
tags:
- antismash
- antismash/antismashlite
files:
- path: output/antismash/test/NZ_CP069563.1.region001.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/NZ_CP069563.1.region002.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/css/bacteria.css
md5sum: 8b3c2f8b143d5245a5f42f55803c532c
- path: output/antismash/test/index.html
md5sum: 3773c3ec61fb1e8cd9a67791b37d9b79
- path: output/antismash/test/js/antismash.js
md5sum: 58e90c3d783ae014cc3d51849bcb50a2
- path: output/antismash/test/js/jquery.js
md5sum: 397754ba49e9e0cf4e7c190da78dda05
- path: output/antismash/test/js/jquery.tablesorter.min.js
md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
- path: output/antismash/test/regions.js
contains: [ '"seq_id": "NZ_CP069563.1"' ]
- path: output/antismash/test/test.gbk
contains: ['/tool="antismash"']
- path: output/antismash/test/test.json
contains: ['"id": "NZ_CP069563.1"']
- path: output/antismash/test/test.log
contains: ['antiSMASH status: SUCCESS']
- path: output/antismash/test/test.zip
- path: output/antismash/versions.yml
md5sum: da6bed0032d0f7ad4741e0074ad6b1ff
- path: output/gunzip/genome.fna
md5sum: dafd38f5454b54fbea38245d773062a5
- path: output/gunzip/versions.yml
md5sum: 93ce587e93791c8cf500482d42b6069f
- path: output/prokka/test/test.err
md5sum: 194fd8a1d1cde9919841a1afd4414760
- path: output/prokka/test/test.faa
md5sum: 8fefbfa7860f280cc881c3a3b377d6da
- path: output/prokka/test/test.ffn
md5sum: 9c4d4d7dc28625bcb13c6fbd27ca13c3
- path: output/prokka/test/test.fna
md5sum: 96aa7707b864499745e8946f169ae8e0
- path: output/prokka/test/test.fsa
md5sum: dbe7d3d43d46920802d2aec5cd177ddc
- path: output/prokka/test/test.gbk
md5sum: 286ea011a64c0d281de3981ed2f296ff
- path: output/prokka/test/test.gff
md5sum: 9f733b702454e7750b7d4686369fe7e4
- path: output/prokka/test/test.log
contains: ["Annotation finished successfully."]
- path: output/prokka/test/test.sqn
md5sum: a901ac190675f976e373219f0191d067
- path: output/prokka/test/test.tbl
md5sum: 98f3b705f47b40255631ae43823e8271
- path: output/prokka/test/test.tsv
md5sum: 26e8aa4b2212f320e82b6db7c93d4461
- path: output/prokka/test/test.txt
md5sum: aea5834a64dff02d3588cecbe25c3914
- path: output/prokka/versions.yml
md5sum: 286ac10895a9f26ee8dd933dbc5d2b1c
- path: output/untar1/versions.yml
md5sum: 6c1bfedb010be6dfee273aa267b1cae3
- path: output/untar2/versions.yml
md5sum: 65db3fe9c809e5371158deae444fb343
- path: output/untar3/versions.yml
md5sum: 713d3aa0ee24ff680a8024cc53765d60