mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
105 lines
4.6 KiB
YAML
105 lines
4.6 KiB
YAML
- name: antismash antismashlite test_antismashlite
|
|
command: nextflow run tests/modules/antismash/antismashlite -entry test_antismashlite -c tests/config/nextflow.config
|
|
tags:
|
|
- antismash/antismashlite
|
|
- antismash
|
|
files:
|
|
- path: output/antismash/test/NZ_CP069563.1.region001.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/NZ_CP069563.1.region002.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/css/bacteria.css
|
|
md5sum: 8b3c2f8b143d5245a5f42f55803c532c
|
|
- path: output/antismash/test/genome.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/genome.json
|
|
contains: ['{"version": "6.0.1", "input_file": "genome.gbff.gz", "records": [{"id": "NZ_CP069563.1", "seq": {"data":']
|
|
- path: output/antismash/test/genome.zip
|
|
- path: output/antismash/test/index.html
|
|
md5sum: 32aaf51315258af3b300d9a5bafd7bdc
|
|
- path: output/antismash/test/js/antismash.js
|
|
md5sum: 58e90c3d783ae014cc3d51849bcb50a2
|
|
- path: output/antismash/test/js/jquery.js
|
|
md5sum: 397754ba49e9e0cf4e7c190da78dda05
|
|
- path: output/antismash/test/js/jquery.tablesorter.min.js
|
|
md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
|
|
- path: output/antismash/test/regions.js
|
|
md5sum: dfc82025379d87df63fbfce734e67725
|
|
- path: output/antismash/test/test.log
|
|
contains: ['antiSMASH version: 6.0.1']
|
|
- path: output/antismash/versions.yml
|
|
md5sum: 7151dfd4d39173338397b2dab50acf8e
|
|
- path: output/untar1/versions.yml
|
|
md5sum: 1e4721017721c45370996318e6b807e5
|
|
- path: output/untar2/versions.yml
|
|
md5sum: a6ae4977a432f3c5ef26687cec8622de
|
|
- path: output/untar3/versions.yml
|
|
md5sum: a5ee00c1c426ed601ff654891ba0f645
|
|
|
|
- name: antismash antismashlite test_prokka_antismashlite
|
|
command: nextflow run tests/modules/antismash/antismashlite -entry test_prokka_antismashlite -c tests/config/nextflow.config
|
|
tags:
|
|
- antismash
|
|
- antismash/antismashlite
|
|
files:
|
|
- path: output/antismash/test/NZ_CP069563.1.region001.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/NZ_CP069563.1.region002.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/css/bacteria.css
|
|
md5sum: 8b3c2f8b143d5245a5f42f55803c532c
|
|
- path: output/antismash/test/index.html
|
|
md5sum: 3773c3ec61fb1e8cd9a67791b37d9b79
|
|
- path: output/antismash/test/js/antismash.js
|
|
md5sum: 58e90c3d783ae014cc3d51849bcb50a2
|
|
- path: output/antismash/test/js/jquery.js
|
|
md5sum: 397754ba49e9e0cf4e7c190da78dda05
|
|
- path: output/antismash/test/js/jquery.tablesorter.min.js
|
|
md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
|
|
- path: output/antismash/test/regions.js
|
|
contains: [ '"seq_id": "NZ_CP069563.1"' ]
|
|
- path: output/antismash/test/test.gbk
|
|
contains: ['/tool="antismash"']
|
|
- path: output/antismash/test/test.json
|
|
contains: ['"id": "NZ_CP069563.1"']
|
|
- path: output/antismash/test/test.log
|
|
contains: ['antiSMASH status: SUCCESS']
|
|
- path: output/antismash/test/test.zip
|
|
- path: output/antismash/versions.yml
|
|
md5sum: da6bed0032d0f7ad4741e0074ad6b1ff
|
|
- path: output/gunzip/genome.fna
|
|
md5sum: dafd38f5454b54fbea38245d773062a5
|
|
- path: output/gunzip/versions.yml
|
|
md5sum: 93ce587e93791c8cf500482d42b6069f
|
|
- path: output/prokka/test/test.err
|
|
md5sum: 194fd8a1d1cde9919841a1afd4414760
|
|
- path: output/prokka/test/test.faa
|
|
md5sum: 8fefbfa7860f280cc881c3a3b377d6da
|
|
- path: output/prokka/test/test.ffn
|
|
md5sum: 9c4d4d7dc28625bcb13c6fbd27ca13c3
|
|
- path: output/prokka/test/test.fna
|
|
md5sum: 96aa7707b864499745e8946f169ae8e0
|
|
- path: output/prokka/test/test.fsa
|
|
md5sum: dbe7d3d43d46920802d2aec5cd177ddc
|
|
- path: output/prokka/test/test.gbk
|
|
md5sum: 286ea011a64c0d281de3981ed2f296ff
|
|
- path: output/prokka/test/test.gff
|
|
md5sum: 9f733b702454e7750b7d4686369fe7e4
|
|
- path: output/prokka/test/test.log
|
|
contains: ["Annotation finished successfully."]
|
|
- path: output/prokka/test/test.sqn
|
|
md5sum: a901ac190675f976e373219f0191d067
|
|
- path: output/prokka/test/test.tbl
|
|
md5sum: 98f3b705f47b40255631ae43823e8271
|
|
- path: output/prokka/test/test.tsv
|
|
md5sum: 26e8aa4b2212f320e82b6db7c93d4461
|
|
- path: output/prokka/test/test.txt
|
|
md5sum: aea5834a64dff02d3588cecbe25c3914
|
|
- path: output/prokka/versions.yml
|
|
md5sum: 286ac10895a9f26ee8dd933dbc5d2b1c
|
|
- path: output/untar1/versions.yml
|
|
md5sum: 6c1bfedb010be6dfee273aa267b1cae3
|
|
- path: output/untar2/versions.yml
|
|
md5sum: 65db3fe9c809e5371158deae444fb343
|
|
- path: output/untar3/versions.yml
|
|
md5sum: 713d3aa0ee24ff680a8024cc53765d60
|