mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
750bd8c3e3
* Adding bigWig and deeptools computeMatrix files to config * Adding meta.yml for deeptools modules * Add test for deeptools modules * Fixing and reordering tags * Fixing conda test that worked in local... * Apply suggestions from code review * Changing bigwig file pattern to include bigwig extension * Saving after last change is a good practice Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
55 lines
1.4 KiB
YAML
55 lines
1.4 KiB
YAML
name: deeptools_plotprofile
|
|
description: plots values produced by deeptools_computematrix as a profile plot
|
|
keywords:
|
|
- plot
|
|
- profile
|
|
- scores
|
|
- matrix
|
|
tools:
|
|
- deeptools:
|
|
description: A set of user-friendly tools for normalization and visualization of deep-sequencing data
|
|
homepage:
|
|
documentation: https://deeptools.readthedocs.io/en/develop/index.html
|
|
tool_dev_url: https://github.com/deeptools/deepTools
|
|
doi: "10.1093/nar/gku365"
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- matrix:
|
|
type: file
|
|
description: |
|
|
gzipped matrix file produced by deeptools_
|
|
computematrix deeptools utility
|
|
pattern: "*.{mat.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- pdf:
|
|
type: file
|
|
description: |
|
|
Output figure containing resulting plot
|
|
pattern: "*.{plotProfile.pdf}"
|
|
- matrix:
|
|
type: file
|
|
description: |
|
|
File containing the matrix of values
|
|
used to generate the profile
|
|
pattern: "*.{plotProfile.mat.tab}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
|
|
authors:
|
|
- "@emiller88"
|
|
- "@drpatelh"
|
|
- "@joseespinosa"
|