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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
530 B
YAML
16 lines
530 B
YAML
- name: Run bwameth single-end test workflow
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command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
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tags:
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- bwameth
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- bwameth/align
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files:
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- path: output/test_single_end/test.bam
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- name: Run bwameth paired-end test workflow
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command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
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tags:
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- bwameth
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- bwameth/align
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files:
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- path: output/test_paired_end/test.bam
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