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750bd8c3e3
* Adding bigWig and deeptools computeMatrix files to config * Adding meta.yml for deeptools modules * Add test for deeptools modules * Fixing and reordering tags * Fixing conda test that worked in local... * Apply suggestions from code review * Changing bigwig file pattern to include bigwig extension * Saving after last change is a good practice Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
532 B
Text
16 lines
532 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DEEPTOOLS_COMPUTEMATRIX } from '../../../../software/deeptools/computematrix/main.nf' addParams( options: ['args' : 'scale-regions -b 1000'] )
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workflow test_deeptools_computematrix {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_bigwig'], checkIfExists: true)
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]
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bed = file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
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DEEPTOOLS_COMPUTEMATRIX ( input, bed )
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}
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