nf-core_modules/tests/software/mosdepth/main.nf
Robert A. Petit III c9256616b9
update tests for new config (#384)
* update tests for new config

* fix quast, update more

* more updates!

* more tests updated

* fix tests, added tabix gff3.gz

* Delete main.nf

Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 20:22:06 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
workflow test_mosdepth {
input = [ [ id:'test', single_end:true ],
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ],
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
]
dummy = file("dummy_file.txt")
window = 100
MOSDEPTH ( input, dummy, window )
}