mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
16e8d21477
* add nanoplot * add Nanopore 100 read subset bam and fastq * add nanoplot module and sequencing_summary.txt * Update pytest_software.yml * Update main.nf * test directory path * testing one output file * Update main.nf * fix typo * remove path to test outputs (it worked locally) * use test_data.config in test * add meta.yml * allowing either summary.txt or fastq.gz inputs * fix linting and test.yml * test whether github check can catch the output * add summary.txt test output paths * check Nanoplot-report.html output
17 lines
505 B
YAML
17 lines
505 B
YAML
|
|
- name: nanoplot_summary
|
|
command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_summary -c tests/config/nextflow.config
|
|
tags:
|
|
- nanoplot
|
|
files:
|
|
- path: ./output/nanoplot/NanoPlot-report.html
|
|
contains:
|
|
- "report"
|
|
- name: nanoplot_fastq
|
|
command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_fastq -c tests/config/nextflow.config
|
|
tags:
|
|
- nanoplot
|
|
files:
|
|
- path: ./output/nanoplot/NanoPlot-report.html
|
|
contains:
|
|
- "report"
|