nf-core_modules/tests/software/qcat/main.nf
Harshil Patel 466ab67808
Fixes for nanoseq modules (#479)
* Fix minimap2 index module

* Fix minimap2 index tests

* Fix graphmap2 index module

* Fix graphmap2 module

* Fix ECLint

* Fix bedtools bamtobed module

* Fix tests for bedtools bamtobed module

* Add tag for graphmap2 align module

* Fix EClint

* Fix qcat module

* Add md5sum for graphmap2/align module

* Remove non-started test data file

* Remove md5sum for graphmap2 align
2021-04-30 15:57:43 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { QCAT } from '../../../software/qcat/main.nf' addParams( options: [:] )
workflow test_qcat {
input = [ [ id:'test' ], // meta map
[ file("https://github.com/nf-core/test-datasets/raw/nanoseq/fastq/nondemultiplexed/sample_nobc_dx.fastq.gz", checkIfExists: true) ]
]
barcode_kit = 'NBD103/NBD104'
QCAT ( input, barcode_kit )
}