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61c88c6233
* fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
36 lines
1.3 KiB
Text
36 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HAMRONIZATION_DEEPARG } from '../../../../modules/hamronization/deeparg/main.nf'
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include { HAMRONIZATION_DEEPARG as HAMRONIZATION_DEEPARG_SECOND } from '../../../../modules/hamronization/deeparg/main.nf'
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include { HAMRONIZATION_SUMMARIZE } from '../../../../modules/hamronization/summarize/main.nf'
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workflow test_hamronization_summarize {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['genome']['genome_mapping_potential_arg'], checkIfExists: true),
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]
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input2 = [
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[ id:'test2', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['genome']['genome_mapping_potential_arg'], checkIfExists: true),
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]
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HAMRONIZATION_DEEPARG ( input, 'tsv', '1.0.2', '2' )
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HAMRONIZATION_DEEPARG_SECOND ( input2, 'tsv', '1.0.2', '2' )
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ch_deeparg_run_one = HAMRONIZATION_DEEPARG.out.tsv
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ch_deeparg_run_two = HAMRONIZATION_DEEPARG_SECOND.out.tsv
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ch_deeparg_run_one
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.mix( ch_deeparg_run_two )
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.map{
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[ it[1] ]
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}
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.collect()
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.set { ch_input_for_summarize }
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HAMRONIZATION_SUMMARIZE ( ch_input_for_summarize , 'json' )
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}
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