mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
263bbe56d2
* add new module samtools_depth * fixed main.nf for samtools/depth * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
13 lines
395 B
Text
13 lines
395 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SAMTOOLS_DEPTH } from '../../../../modules/samtools/depth/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_samtools_depth {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true) ]
|
|
|
|
SAMTOOLS_DEPTH ( input )
|
|
}
|