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https://github.com/MillironX/nf-core_modules.git
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15c7190e22
* fix: remove left-over unnecessary code * Switch to more portable solution for singularity container issue by using bind paths * Fix input collision of dummy files * Repalce dummy with which bash * Remove dummy usage from tests * Apply suggestions from code review * Fix singularity typo
19 lines
538 B
Text
19 lines
538 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DEEPARG_DOWNLOADDATA } from '../../../../modules/deeparg/downloaddata/main.nf'
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include { DEEPARG_PREDICT } from '../../../../modules/deeparg/predict/main.nf'
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workflow test_deeparg_predict {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
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'LS'
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]
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DEEPARG_DOWNLOADDATA( )
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DEEPARG_PREDICT ( input, DEEPARG_DOWNLOADDATA.out.db )
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}
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