nf-core_modules/modules/prodigal/meta.yml
Antonia Schuster a45e030166
Allow compressed input for prodigal (#1200)
* Allow compressed input for prodigal

* use pigz instead of gzip

* fix typo
2022-01-28 09:05:30 +01:00

55 lines
1.6 KiB
YAML

name: prodigal
description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
keywords:
- sort
tools:
- prodigal:
description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
homepage: {https://github.com/hyattpd/Prodigal}
documentation: {https://github.com/hyattpd/prodigal/wiki}
tool_dev_url: {}
doi: "10.1186/1471-2105-11-119"
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- genome:
type: file
description: fasta/fasta.gz file
- output_format:
type: string
description: Output format ("gbk"/"gff"/"sqn"/"sco")
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- nucleotide_fasta:
type: file
description: nucleotide sequences file
pattern: "*.{fna}"
- amino_acid_fasta:
type: file
description: protein translations file
pattern: "*.{faa}"
- all_gene_annotations:
type: file
description: complete starts file
pattern: "*.{_all.txt}"
- gene_annotations:
type: file
description: gene annotations in output_format given as input
pattern: "*.{output_format}"
authors:
- "@grst"