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* add racon * add racon * add racon * add racon module * add racon module * edit racon module * edit racon module * edit racon module * edit racon module Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: racon
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description: Consensus module for raw de novo DNA assembly of long uncorrected reads
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keywords:
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- assembly
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- pacbio
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- nanopore
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- polish
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tools:
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- racon:
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description: Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
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homepage: https://github.com/lbcb-sci/racon
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documentation: https://github.com/lbcb-sci/racon
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tool_dev_url: https://github.com/lbcb-sci/racon
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doi: https://doi.org/10.1101/gr.214270.116
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input FastQ files. Racon expects single end reads
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pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
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- assembly:
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type: file
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description: Genome assembly to be improved
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pattern: "*.{fasta,fa}"
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- paf:
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type: file
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description: Alignment in PAF format
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pattern: "*.paf"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- improved_assembly:
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type: file
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description: Improved genome assembly
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pattern: "*_assembly_consensus.fasta.gz"
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authors:
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- "@avantonder"
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