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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
32 lines
868 B
YAML
32 lines
868 B
YAML
name: snpsites
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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keywords:
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- SNPs
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- invariant
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- constant
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tools:
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- snpsites:
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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homepage: https://www.sanger.ac.uk/tool/snp-sites/
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documentation: https://github.com/sanger-pathogens/snp-sites
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licence: ['GPL-3.0-or-later']
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input:
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- alignment:
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type: file
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description: fasta alignment file
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pattern: "*.{fasta,fas,fa,aln}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- fasta:
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type: file
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description: Variant fasta file
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pattern: "*.{fas}"
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- constant_sites:
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type: file
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description: Text file containing counts of constant sites
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pattern: "*.{sites.txt}"
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authors:
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- "@avantonder"
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