mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
15 lines
527 B
Text
15 lines
527 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BLAST_MAKEBLASTDB } from '../../../../software/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
|
|
include { BLAST_BLASTN } from '../../../../software/blast/blastn/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_blast_blastn {
|
|
|
|
def input = []
|
|
input = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
|
|
|
|
BLAST_MAKEBLASTDB (input)
|
|
BLAST_BLASTN ([ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db)
|
|
}
|