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* Add atlas/splitmerge module * Finish the tests for atlas/splitmerge * Prettier * Update modules/atlas/splitmerge/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Remove curly brackets from meta.yml parameters For single-file outputs, as reviewed * Lintung: Remove trailing white-space Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
15 lines
616 B
Text
15 lines
616 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ATLAS_SPLITMERGE } from '../../../../modules/atlas/splitmerge/main.nf'
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//MAIN
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workflow test_atlas_splitmerge {
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meta = [ id:'test', single_end:false ]
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bam = file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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bai = file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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settings = file(params.test_data['homo_sapiens']['illumina']['read_group_settings_txt'], checkIfExists: true)
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ATLAS_SPLITMERGE ( [meta, bam, bai, settings, []] )
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}
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