nf-core_modules/modules/rseqc/inferexperiment/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

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1.1 KiB
YAML

name: rseqc_inferexperiment
description: Infer strandedness from sequencing reads
keywords:
- rnaseq
- experiment
tools:
- rseqc:
description: |
RSeQC package provides a number of useful modules that can comprehensively evaluate
high throughput sequence data especially RNA-seq data.
homepage: http://rseqc.sourceforge.net/
documentation: http://rseqc.sourceforge.net/
doi: 10.1093/bioinformatics/bts356
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: the bam file to calculate statistics of
pattern: "*.{bam}"
- bed:
type: file
description: a bed file for the reference gene model
pattern: "*.{bed}"
output:
- txt:
type: file
description: infer_experiment results report
pattern: "*.infer_experiment.txt"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@kevinmenden"