mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: blast_blastn
|
|
description: Queries a BLAST DNA database
|
|
keywords:
|
|
- fasta
|
|
- blast
|
|
- blastn
|
|
- DNA sequence
|
|
tools:
|
|
- blast:
|
|
description: |
|
|
BLAST finds regions of similarity between biological sequences.
|
|
homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
|
|
documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
|
|
doi: 10.1016/S0022-2836(05)80360-2
|
|
licence: ["US-Government-Work"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input fasta file containing queries sequences
|
|
pattern: "*.{fa,fasta}"
|
|
- db:
|
|
type: directory
|
|
description: Directory containing blast database
|
|
pattern: "*"
|
|
output:
|
|
- txt:
|
|
type: file
|
|
description: File containing blastn hits
|
|
pattern: "*.{blastn.txt}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|