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52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: diamond_blastp
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description: Queries a DIAMOND database using blastp mode
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keywords:
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- fasta
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- diamond
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- blastp
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- DNA sequence
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tools:
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- diamond:
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description: Accelerated BLAST compatible local sequence aligner
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homepage: https://github.com/bbuchfink/diamond
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documentation: https://github.com/bbuchfink/diamond/wiki
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tool_dev_url: https://github.com/bbuchfink/diamond
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doi: "doi:10.1038/s41592-021-01101-x"
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licence: ["GPL v3.0"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Input fasta file containing query sequences
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pattern: "*.{fa,fasta}"
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- db:
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type: directory
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description: Directory containing the protein blast database
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pattern: "*"
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- outext:
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type: string
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description: |
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Specify the type of output file to be generated. `blast` corresponds to
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BLAST pairwise format. `xml` corresponds to BLAST xml format.
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`txt` corresponds to to BLAST tabular format. `tsv` corresponds to
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taxonomic classification format.
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pattern: "blast|xml|txt|daa|sam|tsv|paf"
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output:
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- txt:
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type: file
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description: File containing blastp hits
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pattern: "*.{blastp.txt}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@spficklin"
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- "@jfy133"
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