mirror of
https://github.com/MillironX/nf-core_modules.git
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3cabc95d0e
* Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml * Added module arriba * Changes in test configs * Added module Arriba for fusion detection * Fixed review comments * Added an output option for discarded fusions * Resolved some conflits * conflicts * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
93 lines
4 KiB
YAML
93 lines
4 KiB
YAML
- name: arriba test_arriba_single_end
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command: nextflow run tests/modules/arriba -entry test_arriba_single_end -c tests/config/nextflow.config
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tags:
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- arriba
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files:
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- path: output/arriba/test.fusions.discarded.tsv
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md5sum: cad8c215b938d1e45b747a5b7898a4c2
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- path: output/arriba/test.fusions.tsv
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md5sum: 7c3383f7eb6d79b84b0bd30a7ef02d70
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- path: output/index/star/Genome
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md5sum: a654229fbca6071dcb6b01ce7df704da
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- path: output/index/star/Log.out
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- path: output/index/star/SA
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md5sum: 8c3edc46697b72c9e92440d4cf43506c
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- path: output/index/star/SAindex
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md5sum: 9f085c626553b1c52f2827421972ac10
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- path: output/index/star/chrLength.txt
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md5sum: c81f40f27e72606d7d07097c1d56a5b5
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- path: output/index/star/chrName.txt
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md5sum: 5ae68a67b70976ee95342a7451cb5af1
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- path: output/index/star/chrNameLength.txt
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md5sum: b190587cae0531f3cf25552d8aa674db
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- path: output/index/star/chrStart.txt
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md5sum: 8d3291e6bcdbe9902fbd7c887494173f
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- path: output/index/star/exonGeTrInfo.tab
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md5sum: d04497f69d6ef889efd4d34fe63edcc4
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- path: output/index/star/exonInfo.tab
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md5sum: 0d560290fab688b7268d88d5494bf9fe
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- path: output/index/star/geneInfo.tab
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md5sum: 8b608537307443ffaee4927d2b428805
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- path: output/index/star/genomeParameters.txt
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md5sum: 9e42067b1ec70b773257529230dd7b3a
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- path: output/index/star/sjdbInfo.txt
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md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
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- path: output/index/star/sjdbList.fromGTF.out.tab
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md5sum: 8760c33e966dad0b39f440301ebbdee4
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- path: output/index/star/sjdbList.out.tab
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md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
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- path: output/index/star/transcriptInfo.tab
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md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
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- path: output/star/test.Aligned.out.bam
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md5sum: 29c99195dcc79ff4df1f754ff16aac78
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- path: output/star/test.Log.final.out
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- path: output/star/test.Log.out
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- path: output/star/test.Log.progress.out
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- path: output/star/test.SJ.out.tab
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- name: arriba test_arriba_paired_end
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command: nextflow run tests/modules/arriba -entry test_arriba_paired_end -c tests/config/nextflow.config
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tags:
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- arriba
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files:
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- path: output/arriba/test.fusions.discarded.tsv
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md5sum: 85e36c887464e4deaa65f45174d3b8fd
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- path: output/arriba/test.fusions.tsv
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md5sum: 7c3383f7eb6d79b84b0bd30a7ef02d70
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- path: output/index/star/Genome
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md5sum: a654229fbca6071dcb6b01ce7df704da
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- path: output/index/star/Log.out
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- path: output/index/star/SA
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md5sum: 8c3edc46697b72c9e92440d4cf43506c
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- path: output/index/star/SAindex
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md5sum: 9f085c626553b1c52f2827421972ac10
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- path: output/index/star/chrLength.txt
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md5sum: c81f40f27e72606d7d07097c1d56a5b5
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- path: output/index/star/chrName.txt
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md5sum: 5ae68a67b70976ee95342a7451cb5af1
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- path: output/index/star/chrNameLength.txt
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md5sum: b190587cae0531f3cf25552d8aa674db
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- path: output/index/star/chrStart.txt
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md5sum: 8d3291e6bcdbe9902fbd7c887494173f
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- path: output/index/star/exonGeTrInfo.tab
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md5sum: d04497f69d6ef889efd4d34fe63edcc4
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- path: output/index/star/exonInfo.tab
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md5sum: 0d560290fab688b7268d88d5494bf9fe
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- path: output/index/star/geneInfo.tab
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md5sum: 8b608537307443ffaee4927d2b428805
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- path: output/index/star/genomeParameters.txt
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md5sum: 9e42067b1ec70b773257529230dd7b3a
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- path: output/index/star/sjdbInfo.txt
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md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
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- path: output/index/star/sjdbList.fromGTF.out.tab
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md5sum: 8760c33e966dad0b39f440301ebbdee4
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- path: output/index/star/sjdbList.out.tab
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md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
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- path: output/index/star/transcriptInfo.tab
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md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
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- path: output/star/test.Aligned.out.bam
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md5sum: d724ca90a102347b9c5052a33ea4d308
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- path: output/star/test.Log.final.out
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- path: output/star/test.Log.out
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- path: output/star/test.Log.progress.out
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- path: output/star/test.SJ.out.tab
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