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59ca7444cf
* adding plink module using nf-core tool [ci skip] * Restructures the project for plink/vcf (#1) * Add version string for plink * Create a plink/vcf module * small tweaks on main.nf and started to test [ci skip] * small changes on test args, local test with docker passed! * Update plink/vcf module listing * Update tag * fix tags as per linting guidelines * revert to the original state of tags * adding --threads to `main.nf` and `meta.yml` information Co-authored-by: Abhinav Sharma <abhi18av@users.noreply.github.com>
13 lines
479 B
Text
13 lines
479 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PLINK_VCF } from '../../../../modules/plink/vcf/main.nf' addParams( options: ['args':" --make-bed --biallelic-only strict --vcf-half-call missing --double-id --recode ped --id-delim \'=\' --allow-extra-chr"])
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workflow test_plink_vcf {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
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PLINK_VCF ( input )
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}
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