mirror of
https://github.com/MillironX/nf-core_modules.git
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2c3c87a10f
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add leeHom module * Update modules/leehom/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/leehom/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/leehom/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/leehom/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
43 lines
1.6 KiB
YAML
43 lines
1.6 KiB
YAML
- name: leehom test_leehom_bam
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command: nextflow run tests/modules/leehom -entry test_leehom_bam -c tests/config/nextflow.config
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tags:
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- leehom
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files:
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- path: output/leehom/test.bam
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md5sum: 19a1bf95714523868791f1d4d3aaee73
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- path: output/leehom/test.log
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md5sum: d1f5da273eb69f41babda510797c7671
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- path: output/samtools/test.bam
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md5sum: 25d13b3b31b147bb3836dea9932c38dd
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- name: leehom test_leehom_se_fq
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command: nextflow run tests/modules/leehom -entry test_leehom_se_fq -c tests/config/nextflow.config
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tags:
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- leehom
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files:
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- path: output/leehom/test.fail.fq.gz
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md5sum: 7029066c27ac6f5ef18d660d5741979a
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- path: output/leehom/test.fq.gz
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md5sum: ed10c4bbf5c3082ca68823535b91e1e2
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- path: output/leehom/test.log
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md5sum: 59aa280cb72dfbea05ba913cb89db143
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- name: leehom test_leehom_pe_fq
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command: nextflow run tests/modules/leehom -entry test_leehom_pe_fq -c tests/config/nextflow.config
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tags:
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- leehom
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files:
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- path: output/leehom/test.fail.fq.gz
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md5sum: 7029066c27ac6f5ef18d660d5741979a
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- path: output/leehom/test.fq.gz
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md5sum: 84929b78e3f89371ecd3b4c915b9ec33
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- path: output/leehom/test.log
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md5sum: 800b5a88dc0822886bfbb271029e2a4a
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- path: output/leehom/test_r1.fail.fq.gz
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md5sum: 7029066c27ac6f5ef18d660d5741979a
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- path: output/leehom/test_r1.fq.gz
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md5sum: e9258420fa712e8536106995a7d1d97a
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- path: output/leehom/test_r2.fail.fq.gz
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md5sum: 7029066c27ac6f5ef18d660d5741979a
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- path: output/leehom/test_r2.fq.gz
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md5sum: 27230bcc5eae81ec5c1701798d39c1af
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