nf-core_modules/software/cooler/dump/meta.yml
JIANHONG OU 8d4c6de50d
Cooler dump (#516)
* add software/cooler

* fix the wrong files uploaded.

* create a branch for cooler/dump

* remove the bin size from metadata.
2021-06-09 11:14:17 +02:00

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name: cooler_dump
description: Dump a coolers data to a text stream.
keywords:
- dump
tools:
- cooler:
description: Sparse binary format for genomic interaction matrices
homepage: https://cooler.readthedocs.io/en/latest/index.html
documentation: https://cooler.readthedocs.io/en/latest/index.html
tool_dev_url: https://github.com/open2c/cooler
doi: "10.1093/bioinformatics/btz540"
licence: ['BSD-3-clause']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- cool:
type: file
description: Path to COOL file
pattern: "*.{cool,mcool}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- bedpe:
type: file
description: Output text file
pattern: "*.bedpe"
authors:
- "@jianhong"