mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
fce4e60864
* bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml
37 lines
1,017 B
YAML
37 lines
1,017 B
YAML
name: rsem_preparereference
|
|
description: Prepare a reference genome for RSEM
|
|
keywords:
|
|
- rsem
|
|
- reference
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
|
|
homepage: https://github.com/deweylab/RSEM
|
|
documentation: https://github.com/deweylab/RSEM
|
|
doi: https://doi.org/10.1186/1471-2105-12-323
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: The Fasta file of the reference genome
|
|
pattern: "*.{fasta,fa}"
|
|
- gtf:
|
|
type: file
|
|
description: The GTF file of the reference genome
|
|
pattern: "*.gtf"
|
|
output:
|
|
- rsem:
|
|
type: directory
|
|
description: RSEM index directory
|
|
pattern: "rsem"
|
|
- transcript_fasta:
|
|
type: file
|
|
description: Fasta file of transcripts
|
|
pattern: "rsem/*transcripts.fa"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|