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894349b9b5
* Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map.
13 lines
431 B
Text
13 lines
431 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BISMARK_DEDUPLICATE } from '../../../../software/bismark/deduplicate/main.nf' addParams( options: [:] )
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workflow test_bismark_deduplicate {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_paired_end_methylated_bam'], checkIfExists: true) ]
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]
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BISMARK_DEDUPLICATE ( input )
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}
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