mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
b6e4ecabba
* Bump pangolin version * Add nextclade to software list * Add nextclade module * Update md5sum for Pangolin due to version bump * Adding some URL to meta.yml * Adding new line at end of file Co-authored-by: JoseEspinosa <kadomu@gmail.com>
33 lines
1.1 KiB
Text
Executable file
33 lines
1.1 KiB
Text
Executable file
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { NEXTCLADE } from '../../../software/nextclade/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_nextclade_json {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'json' )
|
|
}
|
|
|
|
workflow test_nextclade_csv {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'csv' )
|
|
}
|
|
|
|
workflow test_nextclade_tsv {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'tsv' )
|
|
}
|
|
|
|
workflow test_nextclade_tree {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'tree' )
|
|
}
|