mirror of
https://github.com/MillironX/nf-core_modules.git
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2ed9b6ae28
* new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
31 lines
899 B
YAML
31 lines
899 B
YAML
- name: raxmlng no_bootstrap
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command: nextflow run ./tests/software/raxmlng -entry test_raxmlng_no_bootstrap -c tests/config/nextflow.config
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tags:
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- raxmlng
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files:
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- path: output/raxmlng/output.raxml.bestTree
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contains:
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- 'sample1:0.359'
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- 'sample2:1.50'
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- 'sample3:0.000001'
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- 'sample4:0.111'
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- name: raxmlng bootstrap
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command: nextflow run ./tests/software/raxmlng -entry test_raxmlng_bootstrap -c tests/config/nextflow.config
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tags:
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- raxmlng
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files:
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- path: output/raxmlng/output.raxml.bestTree
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contains:
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- 'sample1:0.359'
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- 'sample2:1.50'
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- 'sample3:0.000001'
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- 'sample4:0.111'
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- path: output/raxmlng/output.raxml.support
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contains:
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- 'sample1:0.359'
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- 'sample2:1.50'
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- 'sample3:0.000001'
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- 'sample4:0.111'
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contains_regex:
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- '\)[89]\d:'
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