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b59e8054e4
* bump bcftools filter * junctionsaturation meta.yml and test * pytest config entry * bump bcftools version down again * fix test * fix bcftools
16 lines
532 B
Text
16 lines
532 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RSEQC_JUNCTIONSATURATION } from '../../../../software/rseqc/junctionsaturation/main.nf' addParams(options: [:])
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workflow test_rseqc_junctionsaturation {
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input = [
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[ id:'test', single_end: false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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bed = file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
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RSEQC_JUNCTIONSATURATION ( input, bed )
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}
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