nf-core_modules/tests/software/samtools/flagstat/test.yml at 2c421b7a4333d2fa45de50cc56ac37d9e677ed35 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 13:43:09 +00:00

Maxime U. Garcia 25f88dee3c

Update samtools from 1.10 to 1.12 (#530 )

* feat: remove social preview image to use GitHub OpenGraph

* feat: update samtools from 1.10 to 1.12

* fix: CI tests

* fix: add meta.yml file for samtools/merge

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

2021-06-07 13:07:32 +02:00

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 - name: samtools flagstat
   command: nextflow run ./tests/software/samtools/flagstat -entry test_samtools_flagstat -c tests/config/nextflow.config
   tags:
     - samtools
     - samtools/flagstat
   files:
     - path: ./output/samtools/test.paired_end.sorted.bam.flagstat
       md5sum: 6d7934c303b15ce473f64d502b79984e