nf-core_modules/tests/software/samtools/merge/main.nf
Maxime U. Garcia 25f88dee3c
Update samtools from 1.10 to 1.12 (#530)
* feat: remove social preview image to use GitHub OpenGraph

* feat: update samtools from 1.10 to 1.12

* fix: CI tests

* fix: add meta.yml file for samtools/merge

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2021-06-07 13:07:32 +02:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SAMTOOLS_MERGE } from '../../../../software/samtools/merge/main.nf' addParams( options: [:] )
workflow test_samtools_merge {
input = [ [ id: 'test' ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_methylated_sorted_bam'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true)]
]
SAMTOOLS_MERGE ( input )
}