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2c43c39ccc
* Add pycoqc module * Adding pycoqc module tests * Update pycoqc wilth new functions.nf * Update tests to check for json report content
12 lines
323 B
Text
12 lines
323 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PYCOQC } from '../../../software/pycoqc/main.nf' addParams ( options: ['args' : '--min_pass_qual 0'] )
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workflow test_pycoqc {
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input = [ file(params.test_data['sarscov2']['nanopore']['test_sequencing_summary'], checkIfExists: true) ]
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PYCOQC ( input )
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}
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