mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: bcftools_stats
|
|
description: Generates stats from VCF files
|
|
keywords:
|
|
- variant calling
|
|
- stats
|
|
- VCF
|
|
tools:
|
|
- stats:
|
|
description: |
|
|
Parses VCF or BCF and produces text file stats which is suitable for
|
|
machine processing and can be plotted using plot-vcfstats.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- target_bed:
|
|
type: file
|
|
description: target bed file
|
|
pattern: "*.{bed}"
|
|
- vcf:
|
|
type: file
|
|
description: VCF input file
|
|
pattern: "*.{vcf}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- stats:
|
|
type: file
|
|
description: Text output file containing stats
|
|
pattern: "*_{stats.txt}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|
|
- "@SusiJo"
|