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19 lines
607 B
Text
19 lines
607 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MERYL_COUNT } from '../../../modules/meryl/count/main.nf'
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include { MERYL_HISTOGRAM } from '../../../modules/meryl/histogram/main.nf'
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include { GENOMESCOPE2 } from '../../../modules/genomescope2/main.nf'
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workflow test_genomescope2 {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true)
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]
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MERYL_COUNT ( input )
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MERYL_HISTOGRAM ( MERYL_COUNT.out.meryl_db )
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GENOMESCOPE2 ( MERYL_HISTOGRAM.out.hist )
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}
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