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https://github.com/MillironX/nf-core_modules.git
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26 lines
1.3 KiB
YAML
26 lines
1.3 KiB
YAML
- name: vsearch usearchglobal test_vsearch_usearchglobal
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command: nextflow run ./tests/modules/vsearch/usearchglobal -entry test_vsearch_usearchglobal -c ./tests/config/nextflow.config -c ./tests/modules/vsearch/usearchglobal/nextflow.config
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tags:
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- vsearch/usearchglobal
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- vsearch
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files:
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- path: output/vsearch/test.aln
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contains:
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- "vsearch --usearch_global transcriptome.fasta --db genome.fasta --id 0.985 --threads 2 --alnout test.aln"
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- "Query >lcl|MT192765.1_cds_QIK50427.1_2"
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- "%Id TLen Target"
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- "100% 29829 MT192765.1"
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- "Query 3822nt >lcl|MT192765.1_cds_QIK50427.1_2"
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- "Target 29829nt >MT192765.1"
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- "Qry 21249 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21291"
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- "Tgt 21506 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21548"
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- "21291 cols, 21290 ids (100.0%), 1 gaps (0.0%)"
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- name: vsearch usearchglobal test_vsearch_usearchglobal_userout
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command: nextflow run ./tests/modules/vsearch/usearchglobal -entry test_vsearch_usearchglobal_userout -c ./tests/config/nextflow.config -c ./tests/modules/vsearch/usearchglobal/nextflow.config
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tags:
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- vsearch/usearchglobal
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- vsearch
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files:
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- path: output/vsearch/test.tsv
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md5sum: b6cc50f7c8d18cb82e74dab70ed4baab
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