mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 03:58:17 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: minimap2_align
|
|
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
|
|
keywords:
|
|
- align
|
|
- fasta
|
|
- fastq
|
|
- genome
|
|
- paf
|
|
- reference
|
|
tools:
|
|
- minimap2:
|
|
description: |
|
|
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
|
homepage: https://github.com/lh3/minimap2
|
|
documentation: https://github.com/lh3/minimap2#uguide
|
|
licence: ['MIT']
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FASTA or FASTQ files of size 1 and 2 for single-end
|
|
and paired-end data, respectively.
|
|
- reference:
|
|
type: file
|
|
description: |
|
|
Reference database in FASTA format.
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- paf:
|
|
type: file
|
|
description: Alignment in PAF format
|
|
pattern: "*.paf"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@heuermh"
|