mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-24 11:48:17 +00:00
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
name: rasusa
|
|
description: Randomly subsample sequencing reads to a specified coverage
|
|
keywords:
|
|
- coverage
|
|
- depth
|
|
- subsampling
|
|
tools:
|
|
- rasusa:
|
|
description: Randomly subsample sequencing reads to a specified coverage
|
|
homepage: https://github.com/mbhall88/rasusa
|
|
documentation: https://github.com/mbhall88/rasusa/blob/master/README.md
|
|
tool_dev_url: https://github.com/mbhall88/rasusa
|
|
doi: "10.5281/zenodo.3731394"
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: List of input paired-end FastQ files
|
|
- genome_size:
|
|
type: string
|
|
description: Genome size of the species
|
|
- depth_cutoff:
|
|
type: integer
|
|
description: Depth of coverage cutoff
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- reads:
|
|
type: file
|
|
description: Reads with subsampled coverage
|
|
pattern: "*.fastq.gz"
|
|
|
|
authors:
|
|
- "@thanhleviet"
|